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Title: A distributed computation of Interpro Pfam, PROSITE and ProDom for protein annotation
Authors: Ribeiro, Edward de Oliveira
Zerlotini, Gustavo G.
Lopes, Irving R. M.
Ribeiro, Victor B. R.
Melo, Melo, Alba Cristina Magalhães Alves de
Walter, Maria Emília Machado Telles
Costa, Marcos Mota
BIOFOCO Network
Assunto:: Processamento eletrônico de dados - processamento distribuído
Interpro
Biologia computacional
Issue Date: 30-Sep-2005
Publisher: FUNPEC-RP
Citation: RIBEIRO, Edward et al. A distributed computation of Interpro Pfam, PROSITE and ProDom for protein annotation. Genetics and Molecular Research, v. 4, n. 3, p. 590-598, 2005. Disponível em: <http://www.funpecrp.com.br/gmr/year2005/vol3-4/pdf/wob10.pdf>. Acesso em: 15 jun. 2018.
Abstract: Interpro is a widely used tool for protein annotation in genome sequencing projects, demanding a large amount of computation and representing a huge time-consuming step. We present a strategy to execute programs using databases Pfam, PROSITE and ProDom of Interpro in a distributed environment using a Java-based messaging system. We developed a two-layer scheduling architecture of the distributed infrastructure. Then, we made experiments and analyzed the results. Our distributed system gave much better results than Interpro Pfam, PROSITE and ProDom running in a centralized platform. This approach seems to be appropriate and promising for highly demanding computational tools used for biological applications.
Licença:: Genetics and Molecular Research - Autorização concedida ao Repositório Institucional da Universidade de Brasília (RIUnB) pelo editor da revista, em 29 mar. 2016, com os seguintes termos: disponível sob Licença Creative Commons 4.0 International, que permite copiar, distribuir e transmitir o trabalho, desde que seja citado o autor e licenciante. Não permite o uso para fins comerciais nem a adaptação desta.
Appears in Collections:CIC - Artigos publicados em periódicos

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